Description

Merges the annotation gtf file and the stringtie output gtf files

Input

name:type
description
pattern

stringtie_gtf{:bash}

:file

Stringtie transcript gtf output(s).

*.gtf

annotation_gtf{:bash}

:file

Annotation gtf file (optional).

*.gtf

Output

name:type
description
pattern

gtf{:bash}

stringtie.merged.gtf{:bash}

:file

Merged gtf file

stringtie.merged.gtf

versions_stringtie{:bash}

${task.process}{:bash}

:string

The name of the process

stringtie{:bash}

:string

The name of the tool

stringtie --version{:bash}

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions{:bash}

${task.process}{:bash}

:string

The name of the process

stringtie{:bash}

:string

The name of the tool

stringtie --version{:bash}

:eval

The expression to obtain the version of the tool

Tools

stringtie2
MIT

Transcript assembly and quantification for RNA-Seq